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For hg38
BigWig
Peak-call (q < 1E-05)
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For hg19
BigWig
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Peak-call (q < 1E-10)
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For hg38
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
For hg19
Colocalization
Target Genes (TSS ± 1kb)
Target Genes (TSS ± 5kb)
Target Genes (TSS ± 10kb)
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For hg38
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
For hg19
BigWig
Peak-call (q < 1E-05)
Peak-call (q < 1E-10)
Peak-call (q < 1E-20)
Link Out
Sequence Read Archive
DBCLS SRA
NCBI SRA
ENA
Antigen: CTCF
wikigenes
PDBj
CellType: HRE
ATCC
MeSH
RIKEN BRC
Variation
TogoVar
SRX080400
GSM749737: Stam HRE CTCF 2
Sample information curated by ChIP-Atlas
Antigen
Antigen Class
TFs and others
Antigen
CTCF
Cell type
Cell type Class
Kidney
Cell type
HRE
Tissue
epithelium
Lineage
mesoderm
Description
renal epithelial cells
Attributes by original data submitter
Sample
source_name
HRE
biomaterial_provider
Lonza
cell
HRE
cell organism
Human
cell description
Human Renal Epithelial cells (normal)
cell karyotype
normal
cell lineage
mesoderm
cell sex
U
antibody
CTCF
antibody description
rabbit polyclonal
antibody target description
CTCF zinc finger transcription factor. A sequence specific DNA binding protein that functions as an insulator, blocking enhancer activity. It has also been suggested to block the spreading of chromatin structure in certain instances.
antibody vendor name
Millipore
replicate
2
Sequenced DNA Library
library_name
GSM749737: Stam_HRE_CTCF_2
library_strategy
ChIP-Seq
library_source
GENOMIC
library_selection
ChIP
Sequencing Platform
instrument_model
Illumina Genome Analyzer II
Where can I get the processing logs?
Read processing pipeline
log
hg38
Number of total reads
34733625
Reads aligned (%)
54.0
Duplicates removed (%)
55.8
Number of peaks
38368 (qval < 1E-05)
hg19
Number of total reads
34733625
Reads aligned (%)
53.7
Duplicates removed (%)
56.7
Number of peaks
38251 (qval < 1E-05)
Base call quality data from
DBCLS SRA